Bioinformatics

From Earlham Cluster Department

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<b>Text/ Resources</b>
<b>Text/ Resources</b>
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*Beginning Perl for Bioinformatics. O'Reilly. James D. Tisdall.  
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*<i>Beginning Perl for Bioinformatics</i>. O'Reilly. James D. Tisdall.  
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*Bioinformatics for Dummies.  Jean-Michel Claverie and Cedric Notredame.  
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*<i>Bioinformatics for Dummies</i>.  Jean-Michel Claverie and Cedric Notredame.  
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*Genetics for Dummies. Tara Rodden Robinson.
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*<i>Genetics for Dummies</i>. Tara Rodden Robinson.
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*<i>Developing Bioinformatics Computer Skills</i>. O'Reilly. Cynthia Gibas and Per Jambeck.
Additional articles from various scientific journals.
Additional articles from various scientific journals.
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*An online Beginning Perl book: http://www.perl.org/books/beginning-perl/
Excerpts from other bioinformatic texts (will be determined).
Excerpts from other bioinformatic texts (will be determined).
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<b>Meeting Times</b>
<b>Meeting Times</b>
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<i>[[Sept 20-26]]</i>: Chp. 7 Beginning Perl, Chp. 4 BI for Dummies
<i>[[Sept 20-26]]</i>: Chp. 7 Beginning Perl, Chp. 4 BI for Dummies
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<i>Sept 27-Oct 3</i>: Chp. 8 Beginning Perl, Chp. 5 BI for Dummies
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<i>[[Sept 27-Oct 3]]</i>: Chp. 8 Beginning Perl, Chp. 5 BI for Dummies
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<i>Oct 4-10</i>: Chp. 9 Beginning Perl, Chp. 6 BI for Dummies
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<i>[[Oct 4-10]]</i>: Chp. 9 Beginning Perl, Chp. 6 BI for Dummies
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<i>Oct 11-17</i>: Chp. 10 Beginning Perl, Chp. 7 BI for Dummies
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<i>[[Oct 11-17]]</i>: Chp. 10 Beginning Perl, Chp. 7 BI for Dummies
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<i>Oct 18-24</i>: Chp. 11 Beginning Perl, Chp. 8 BI for Dummies
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<i>[[Oct 18-24]]</i>: Chp. 11 Beginning Perl, Chp. 8 BI for Dummies
<i>[[Oct 25-31]]</i>: Chp. 12 Beginning Perl, Chp. 9 BI for Dummies
<i>[[Oct 25-31]]</i>: Chp. 12 Beginning Perl, Chp. 9 BI for Dummies
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<i>Nov 1-7</i>: Chp. 12 Beginning Perl, Chp. 9 BI for Dummies
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<i>[[Nov 1-7]]</i>: Chp. 12 Beginning Perl, Chp. 9 BI for Dummies
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<i>Nov 8-14</i>: Chp. 11 BI for Dummies, Emphasis on Personal Project
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<i>[[Nov 8-14]]</i>: Writing codes for personal project
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<i>Nov 15-21</i>:  Chp. 12 BI for Dummies, Emphasis on Personal Project
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<i>[[Nov 15-21]]</i>:  Focus on personal project, using modules
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<i>Nov 29-Dec 5</i>: Present Personal Projects as a colloquium to the department
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<i>[[Nov 29-Dec 5]]</i>: Focus on personal project, using modules
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<i>Dec 6-12</i>
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'''Colloquium'''
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<BR>
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We will present a Biology colloquium on February, 11, to introduce the general topic of bioinformatics, applications in "the real world", and propose a syllabus for a course at Earlham, or another small liberal arts undergraduate college.
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[[Week 1]]
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Our outline may be viewed [[here]].

Latest revision as of 01:11, 11 February 2010

Proposed work

Complements academic program

Evaluation

Text/ Resources

Additional articles from various scientific journals.

Excerpts from other bioinformatic texts (will be determined).


Meeting Times

SYLLABUS

Aug 30-Sept 5: Chp. 1-3 Beginning Perl, Install Perl and work through Chp 4. BI for Dummies : Chp. 1.

Sept 6-12: Chp. 5 Beginning Perl, Chp. 2 BI for Dummies

Sept 13-19: Chp. 6 Beginning Perl, Chp. 3 BI for Dummies. Personal Projects should be underway.

Sept 20-26: Chp. 7 Beginning Perl, Chp. 4 BI for Dummies

Sept 27-Oct 3: Chp. 8 Beginning Perl, Chp. 5 BI for Dummies

Oct 4-10: Chp. 9 Beginning Perl, Chp. 6 BI for Dummies

Oct 11-17: Chp. 10 Beginning Perl, Chp. 7 BI for Dummies

Oct 18-24: Chp. 11 Beginning Perl, Chp. 8 BI for Dummies

Oct 25-31: Chp. 12 Beginning Perl, Chp. 9 BI for Dummies

Nov 1-7: Chp. 12 Beginning Perl, Chp. 9 BI for Dummies

Nov 8-14: Writing codes for personal project

Nov 15-21: Focus on personal project, using modules

Nov 29-Dec 5: Focus on personal project, using modules

Colloquium
We will present a Biology colloquium on February, 11, to introduce the general topic of bioinformatics, applications in "the real world", and propose a syllabus for a course at Earlham, or another small liberal arts undergraduate college.

Our outline may be viewed here.

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