Linux version Using ReadLine Running 64Bit Version mothur v.1.32.1 Last updated: 10/16/2013 by Patrick D. Schloss Department of Microbiology & Immunology University of Michigan pschloss@umich.edu http://www.mothur.org When using, please cite: Schloss, P.D., et al., Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol, 2009. 75(23):7537-41. Distributed under the GNU General Public License Type 'help()' for information on the commands that are available Type 'quit()' to exit program Batch Mode mothur > pcr.seqs(fasta=silva.bacteria.fasta, start=13862, end=23444, keepdots=F) Using 1 processors. Output File Names: silva.bacteria.pcr.fasta It took 21 secs to screen 14956 sequences. mothur > system(mv silva.bacteria.pcr.fasta silva.v4.fasta) mothur > system(/bin/echo "starting silva pcr.seqs `date`" >>/dev/stderr) mothur > pcr.seqs(fasta=silva.bacteria.fasta, start=13862, end=23444, keepdots=F) Using 1 processors. Output File Names: silva.bacteria.pcr.fasta It took 21 secs to screen 14956 sequences. mothur > system(/bin/echo "starting silva mv `date`" >>/dev/stderr) mothur > system(mv silva.bacteria.pcr.fasta silva.v4.fasta) mothur > system(/bin/echo "starting silva summary.seqs `date`" >>/dev/stderr) mothur > summary.seqs(fasta=silva.v4.fasta) Using 1 processors. Start End NBases Ambigs Polymer NumSeqs Minimum: 1 8721 229 0 3 1 2.5%-tile: 8 9582 251 0 3 374 25%-tile: 8 9582 252 0 4 3740 Median: 8 9582 252 0 4 7479 75%-tile: 8 9582 252 0 5 11218 97.5%-tile: 8 9582 253 1 6 14583 Maximum: 9 9582 310 5 9 14956 Mean: 7.99719 9581.94 251.969 0.0520193 4.56646 # of Seqs: 14956 Output File Names: silva.v4.summary mothur > system(/bin/ls -ltr > mothur-output-files-1.txt) mothur > system(/bin/echo "starting make.contigs `date`" >>/dev/stderr) mothur > make.contigs(file=FieldTwo2013.files, processors=8) Using 8 processors. Reading fastq data... 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 370000 380000 390000 400000 410000 420000 430000 440000 450000 460000 470000 480000 490000 498777 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 359895 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 370000 380000 390000 400000 410000 413120 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 370000 372646 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 370000 380000 390000 391616 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 370000 380000 388831 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 346456 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 361571 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 349168 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 370000 380000 390000 400000 410000 420000 420541 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 370000 380000 385875 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 362071 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 336042 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 362761 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 370000 380000 390000 400000 400470 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 362143 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 347736 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 294361 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 337620 10000 20000 30000 40000 50000 60000 70000 80000 90000 100000 110000 120000 130000 140000 150000 160000 170000 180000 190000 200000 210000 220000 230000 240000 250000 260000 270000 280000 290000 300000 310000 320000 330000 340000 350000 360000 365316 Done. >>>>> Processing 130819_M01529_0018_2013_1.R1.0ffastatemp (file 1 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_1.R1.0ffastatemp (file 1 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_1.R1.0ffastatemp (file 1 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_1.R1.0ffastatemp (file 1 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_1.R1.0ffastatemp (file 1 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_1.R1.0ffastatemp (file 1 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_1.R1.0ffastatemp (file 1 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 Done. >>>>> Processing 130819_M01529_0018_2013_1.R1.0ffastatemp (file 1 of 20) <<<<< Making contigs... 1000 2000 3000 3000 3000 3000 3000 2000 2000 4000 4000 4000 4000 4000 4000 5000 5000 5000 5000 5000 5000 3000 6000 3000 6000 6000 6000 6000 6000 7000 7000 7000 7000 7000 7000 4000 4000 8000 8000 8000 8000 8000 8000 9000 9000 9000 9000 9000 9000 5000 5000 10000 10000 10000 10000 10000 10000 11000 11000 11000 11000 11000 11000 6000 6000 12000 12000 12000 12000 12000 12000 13000 13000 13000 13000 13000 13000 7000 7000 14000 14000 14000 14000 14000 14000 8000 8000 15000 15000 15000 15000 15000 15000 9000 9000 16000 16000 16000 16000 16000 16000 10000 10000 17000 17000 17000 17000 17000 17000 11000 11000 18000 18000 18000 18000 18000 18000 12000 12000 19000 19000 19000 19000 19000 19000 13000 13000 20000 20000 20000 20000 20000 20000 14000 14000 21000 21000 21000 21000 21000 21000 15000 15000 22000 22000 22000 16000 22000 22000 22000 16000 23000 23000 23000 17000 23000 23000 23000 17000 24000 24000 24000 18000 24000 24000 24000 18000 25000 25000 25000 19000 25000 25000 25000 19000 26000 26000 26000 20000 26000 26000 26000 20000 27000 27000 27000 21000 27000 27000 27000 21000 28000 28000 28000 22000 28000 28000 28000 29000 22000 29000 29000 23000 29000 29000 29000 30000 30000 23000 30000 24000 30000 30000 30000 31000 31000 24000 31000 25000 31000 31000 31000 32000 32000 25000 32000 26000 32000 32000 32000 33000 33000 33000 26000 27000 33000 33000 33000 34000 34000 34000 27000 28000 34000 34000 34000 35000 35000 35000 28000 29000 36000 35000 35000 35000 36000 36000 30000 29000 37000 37000 36000 36000 36000 37000 31000 30000 38000 38000 37000 37000 37000 38000 32000 31000 39000 39000 38000 38000 38000 39000 33000 32000 40000 40000 39000 39000 39000 40000 34000 33000 41000 41000 41000 40000 40000 40000 35000 34000 42000 42000 42000 36000 41000 41000 41000 35000 43000 43000 43000 37000 42000 42000 42000 36000 44000 44000 44000 38000 43000 43000 43000 37000 45000 45000 45000 39000 44000 44000 44000 38000 46000 46000 46000 40000 45000 45000 45000 39000 47000 47000 47000 41000 46000 46000 46000 40000 48000 48000 48000 42000 47000 47000 47000 41000 49000 49000 49000 43000 48000 48000 48000 42000 50000 50000 50000 44000 49000 49000 49000 43000 51000 51000 51000 45000 50000 50000 50000 52000 44000 52000 52000 46000 51000 51000 51000 53000 53000 45000 47000 53000 52000 52000 52000 54000 54000 46000 48000 54000 53000 53000 53000 55000 55000 49000 47000 55000 54000 54000 54000 56000 56000 50000 48000 56000 55000 57000 57000 55000 55000 51000 49000 57000 56000 58000 58000 56000 56000 52000 50000 58000 57000 59000 59000 57000 57000 53000 51000 59000 60000 58000 60000 58000 58000 54000 52000 60000 61000 61000 59000 55000 59000 59000 53000 61000 62000 62000 60000 56000 60000 60000 62347 62347 54000 62000 62347 61000 57000 61000 61000 55000 58000 62000 62000 62000 62347 56000 62347 62347 59000 57000 60000 58000 61000 59000 62000 62348 60000 61000 62000 62347 Done. >>>>> Processing 130819_M01529_0018_2013_11.R1.0ffastatemp (file 2 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_11.R1.0ffastatemp (file 2 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_11.R1.0ffastatemp (file 2 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_11.R1.0ffastatemp (file 2 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_11.R1.0ffastatemp (file 2 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_11.R1.0ffastatemp (file 2 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_11.R1.0ffastatemp (file 2 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_11.R1.0ffastatemp (file 2 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 3000 3000 2000 3000 3000 3000 2000 4000 4000 4000 4000 4000 3000 3000 3000 5000 5000 5000 5000 5000 4000 6000 6000 4000 6000 6000 6000 4000 5000 7000 7000 7000 7000 7000 5000 6000 8000 8000 8000 8000 8000 5000 7000 9000 9000 9000 9000 9000 6000 8000 10000 10000 10000 10000 10000 6000 9000 11000 11000 11000 11000 11000 7000 10000 12000 12000 12000 12000 12000 7000 11000 13000 13000 13000 13000 13000 8000 12000 14000 14000 14000 14000 14000 8000 15000 13000 15000 15000 15000 15000 9000 16000 14000 16000 16000 16000 16000 9000 17000 15000 17000 17000 17000 17000 10000 18000 16000 18000 18000 18000 18000 10000 19000 17000 19000 19000 19000 19000 20000 11000 18000 20000 20000 20000 20000 11000 21000 19000 21000 21000 21000 21000 22000 12000 20000 22000 22000 22000 22000 12000 23000 21000 23000 23000 23000 23000 24000 13000 22000 24000 24000 24000 24000 13000 25000 23000 25000 25000 25000 25000 26000 14000 24000 26000 26000 14000 26000 26000 27000 25000 27000 27000 27000 27000 28000 15000 26000 28000 28000 15000 28000 28000 29000 27000 29000 29000 30000 29000 29000 16000 28000 30000 30000 16000 31000 30000 30000 29000 31000 31000 32000 17000 31000 31000 17000 32000 33000 18000 32000 32000 30000 32000 18000 33000 34000 33000 33000 33000 19000 34000 19000 35000 31000 34000 34000 20000 34000 36000 20000 35000 35000 35000 21000 32000 37000 35000 21000 22000 36000 36000 36000 33000 38000 36000 23000 37000 37000 22000 34000 39000 37000 24000 38000 38000 37000 35000 40000 23000 39000 39000 38000 25000 38000 41000 36000 40000 40000 26000 24000 42000 39000 39000 37000 41000 41000 27000 43000 40000 25000 40000 42000 42000 28000 44000 41000 38000 43000 43000 26000 29000 44987 42000 41000 39000 44000 44000 30000 43000 27000 42000 40000 44986 44987 31000 44000 28000 43000 41000 32000 44987 29000 44000 42000 33000 30000 44987 43000 34000 31000 44000 35000 32000 44987 36000 33000 37000 34000 38000 35000 39000 36000 40000 37000 41000 38000 42000 39000 43000 40000 44000 41000 44987 42000 43000 44000 44987 Done. >>>>> Processing 130819_M01529_0018_2013_12.R1.0ffastatemp (file 3 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_12.R1.0ffastatemp (file 3 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_12.R1.0ffastatemp (file 3 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_12.R1.0ffastatemp (file 3 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_12.R1.0ffastatemp (file 3 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_12.R1.0ffastatemp (file 3 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_12.R1.0ffastatemp (file 3 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_12.R1.0ffastatemp (file 3 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 2000 2000 3000 3000 4000 4000 4000 4000 3000 4000 5000 5000 5000 5000 4000 3000 4000 6000 6000 6000 5000 6000 5000 7000 7000 7000 6000 7000 6000 4000 5000 8000 8000 8000 7000 8000 7000 9000 9000 9000 8000 9000 5000 8000 6000 10000 10000 10000 9000 10000 9000 11000 11000 11000 10000 11000 6000 10000 7000 12000 12000 12000 12000 11000 11000 13000 13000 13000 7000 13000 12000 12000 8000 14000 14000 14000 14000 13000 13000 15000 15000 15000 8000 15000 14000 14000 16000 16000 16000 9000 16000 15000 15000 17000 17000 17000 9000 17000 16000 16000 18000 18000 18000 10000 18000 17000 17000 19000 19000 19000 10000 19000 18000 18000 20000 20000 20000 11000 20000 19000 19000 21000 21000 21000 11000 21000 20000 20000 22000 22000 22000 12000 22000 21000 21000 23000 23000 23000 12000 23000 22000 22000 24000 24000 24000 13000 23000 23000 24000 13000 25000 25000 25000 24000 24000 14000 26000 26000 26000 25000 14000 25000 25000 27000 27000 27000 15000 26000 26000 15000 26000 28000 28000 28000 27000 27000 16000 29000 29000 27000 16000 29000 28000 30000 30000 17000 30000 17000 28000 29000 28000 31000 31000 31000 29000 18000 18000 32000 32000 29000 30000 32000 30000 19000 19000 33000 33000 33000 31000 31000 30000 34000 34000 20000 34000 20000 32000 31000 32000 35000 35000 35000 33000 21000 21000 33000 36000 36000 36000 22000 34000 32000 22000 37000 37000 37000 23000 35000 34000 33000 38000 38000 38000 23000 24000 36000 34000 39000 35000 39000 39000 25000 24000 37000 40000 40000 35000 40000 36000 26000 41000 41000 25000 38000 41000 36000 27000 37000 42000 42000 42000 28000 37000 26000 39000 43000 43000 38000 43000 29000 40000 27000 38000 44000 44000 39000 44000 30000 41000 45000 45000 39000 28000 45000 40000 42000 46000 31000 46000 46000 40000 29000 41000 43000 47000 47000 47000 32000 30000 41000 44000 48000 48000 42000 48000 33000 45000 49000 42000 49000 31000 49000 43000 46000 34000 50000 50000 50000 43000 32000 44000 47000 51000 51000 35000 51000 51640 51640 44000 33000 51640 48000 45000 36000 45000 34000 49000 46000 37000 46000 35000 50000 47000 38000 47000 36000 51000 48000 39000 48000 51640 37000 40000 49000 49000 38000 41000 50000 50000 39000 51000 42000 51000 51640 40000 43000 51640 41000 44000 42000 45000 43000 46000 44000 47000 45000 48000 46000 49000 47000 50000 48000 51000 49000 51640 50000 51000 51640 Done. >>>>> Processing 130819_M01529_0018_2013_13.R1.0ffastatemp (file 4 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_13.R1.0ffastatemp (file 4 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_13.R1.0ffastatemp (file 4 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_13.R1.0ffastatemp (file 4 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_13.R1.0ffastatemp (file 4 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_13.R1.0ffastatemp (file 4 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_13.R1.0ffastatemp (file 4 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_13.R1.0ffastatemp (file 4 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 2000 3000 3000 4000 4000 4000 4000 3000 3000 4000 5000 5000 5000 4000 5000 4000 4000 6000 6000 6000 6000 5000 5000 5000 7000 7000 7000 5000 6000 7000 6000 6000 8000 8000 8000 6000 7000 8000 7000 9000 9000 9000 7000 7000 9000 10000 10000 10000 8000 8000 8000 8000 10000 11000 11000 11000 9000 9000 12000 12000 11000 12000 9000 9000 10000 13000 13000 13000 12000 10000 10000 10000 11000 14000 14000 14000 11000 13000 11000 12000 15000 11000 15000 15000 12000 14000 16000 16000 16000 12000 12000 13000 13000 17000 17000 17000 15000 14000 13000 13000 14000 18000 18000 18000 16000 15000 14000 14000 15000 19000 19000 19000 17000 16000 15000 15000 16000 20000 20000 20000 18000 17000 16000 16000 17000 21000 21000 21000 18000 19000 17000 18000 17000 22000 22000 22000 19000 20000 18000 19000 18000 23000 23000 23000 20000 21000 19000 20000 19000 24000 24000 24000 21000 22000 20000 21000 20000 25000 25000 25000 22000 23000 21000 22000 21000 26000 26000 26000 23000 24000 22000 23000 22000 27000 27000 27000 24000 25000 23000 24000 23000 28000 28000 28000 25000 26000 24000 25000 24000 29000 29000 29000 26000 25000 27000 26000 30000 25000 30000 30000 27000 26000 28000 27000 31000 26000 31000 31000 28000 27000 29000 28000 32000 27000 32000 32000 29000 28000 30000 29000 33000 28000 33000 33000 30000 29000 31000 34000 30000 34000 29000 34000 31000 30000 32000 35000 31000 35000 35000 30000 32000 31000 33000 36000 32000 36000 36000 31000 33000 32000 34000 37000 33000 37000 37000 32000 34000 33000 35000 38000 34000 38000 38000 33000 35000 34000 39000 36000 35000 39000 39000 34000 36000 40000 35000 37000 36000 40000 40000 35000 37000 41000 36000 38000 41000 37000 41000 36000 38000 42000 37000 39000 42000 38000 42000 37000 39000 43000 38000 40000 43000 39000 43000 38000 40000 44000 39000 41000 44000 40000 44000 41000 39000 45000 40000 45000 42000 41000 45000 42000 40000 46000 41000 46000 43000 46000 42000 43000 46580 41000 46581 46581 42000 44000 43000 44000 42000 43000 45000 44000 45000 43000 44000 46000 45000 46000 44000 46581 46581 45000 46000 45000 46580 46000 46000 46581 46581 Done. >>>>> Processing 130819_M01529_0018_2013_14.R1.0ffastatemp (file 5 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_14.R1.0ffastatemp (file 5 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_14.R1.0ffastatemp (file 5 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_14.R1.0ffastatemp (file 5 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_14.R1.0ffastatemp (file 5 of 20) <<<<< Making contigs... 1000 2000 2000 Done. >>>>> Processing 130819_M01529_0018_2013_14.R1.0ffastatemp (file 5 of 20) <<<<< Making contigs... 1000 2000 Done. >>>>> Processing 130819_M01529_0018_2013_14.R1.0ffastatemp (file 5 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_14.R1.0ffastatemp (file 5 of 20) <<<<< Making contigs... 1000 2000 3000 3000 2000 2000 3000 3000 2000 4000 4000 2000 3000 4000 3000 4000 5000 5000 4000 3000 5000 3000 5000 6000 6000 4000 5000 6000 6000 4000 7000 7000 4000 6000 7000 5000 7000 8000 8000 7000 5000 8000 8000 5000 9000 6000 9000 8000 9000 9000 6000 10000 10000 6000 9000 10000 7000 10000 11000 11000 10000 7000 11000 11000 7000 8000 12000 12000 11000 12000 12000 8000 13000 13000 12000 8000 9000 13000 13000 14000 14000 9000 13000 14000 14000 9000 15000 10000 15000 14000 15000 15000 10000 16000 16000 15000 10000 11000 16000 16000 11000 17000 17000 16000 11000 12000 17000 17000 12000 18000 18000 17000 12000 13000 18000 18000 13000 19000 19000 18000 13000 14000 19000 19000 14000 20000 20000 19000 14000 15000 20000 20000 15000 21000 21000 20000 15000 16000 21000 21000 16000 22000 22000 21000 16000 17000 22000 22000 17000 23000 23000 22000 17000 18000 23000 23000 18000 24000 24000 23000 18000 19000 24000 24000 19000 25000 25000 19000 24000 20000 25000 25000 20000 26000 26000 20000 25000 21000 26000 26000 21000 27000 27000 21000 26000 22000 27000 27000 22000 28000 28000 22000 27000 23000 28000 28000 23000 29000 29000 23000 28000 24000 29000 29000 24000 30000 30000 24000 29000 25000 30000 30000 25000 31000 31000 25000 26000 30000 31000 31000 26000 32000 32000 26000 27000 31000 32000 32000 27000 33000 33000 27000 28000 32000 33000 33000 34000 28000 34000 28000 29000 33000 34000 34000 35000 29000 35000 29000 30000 34000 35000 35000 36000 30000 36000 30000 31000 35000 36000 36000 37000 31000 37000 31000 32000 36000 37000 38000 37000 32000 38000 32000 33000 37000 38000 39000 38000 33000 39000 33000 34000 38000 39000 40000 39000 40000 34000 34000 35000 39000 40000 41000 40000 41000 35000 35000 36000 40000 42000 41000 36000 41000 42000 36000 37000 41000 43000 42000 37000 43000 42000 37000 38000 42000 44000 38000 44000 43000 43000 38000 39000 43000 45000 45000 39000 44000 44000 39000 40000 44000 46000 46000 45000 40000 45000 40000 41000 45000 47000 47000 46000 41000 46000 41000 42000 46000 48000 48000 47000 42000 47000 42000 43000 47000 48952 48952 48000 43000 48000 43000 44000 48000 48952 44000 48952 44000 45000 48952 45000 45000 46000 46000 46000 47000 47000 47000 48000 48000 48952 48000 48952 48952 Done. >>>>> Processing 130819_M01529_0018_2013_15.R1.0ffastatemp (file 6 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_15.R1.0ffastatemp (file 6 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_15.R1.0ffastatemp (file 6 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_15.R1.0ffastatemp (file 6 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_15.R1.0ffastatemp (file 6 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_15.R1.0ffastatemp (file 6 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_15.R1.0ffastatemp (file 6 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_15.R1.0ffastatemp (file 6 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 2000 2000 3000 3000 4000 4000 4000 4000 3000 3000 4000 4000 5000 5000 5000 5000 4000 4000 5000 5000 6000 6000 6000 6000 5000 5000 6000 6000 7000 7000 7000 7000 6000 6000 7000 7000 8000 8000 8000 8000 7000 7000 8000 8000 9000 9000 9000 9000 8000 8000 9000 9000 10000 10000 10000 10000 9000 9000 10000 10000 11000 11000 11000 11000 10000 10000 11000 11000 12000 12000 12000 11000 12000 11000 12000 12000 13000 13000 13000 12000 13000 12000 13000 13000 14000 14000 14000 13000 14000 13000 14000 14000 15000 15000 15000 14000 15000 14000 15000 15000 16000 16000 16000 15000 16000 15000 16000 16000 17000 17000 17000 16000 17000 16000 17000 17000 18000 18000 18000 17000 18000 17000 18000 18000 19000 19000 19000 18000 19000 18000 19000 19000 20000 20000 19000 20000 20000 19000 20000 20000 21000 21000 20000 21000 20000 21000 21000 22000 22000 22000 21000 22000 21000 22000 22000 23000 23000 23000 22000 23000 22000 23000 23000 24000 24000 24000 23000 24000 23000 24000 24000 25000 25000 25000 24000 25000 24000 25000 25000 26000 26000 26000 25000 26000 25000 26000 26000 27000 27000 27000 26000 27000 26000 27000 27000 28000 28000 28000 27000 28000 27000 28000 28000 29000 29000 29000 28000 29000 28000 29000 29000 30000 30000 30000 29000 30000 29000 30000 30000 31000 31000 31000 30000 31000 30000 31000 31000 32000 32000 32000 31000 32000 31000 32000 32000 33000 33000 33000 32000 33000 32000 33000 33000 34000 34000 34000 33000 34000 33000 34000 34000 35000 35000 35000 34000 35000 34000 35000 35000 36000 36000 36000 35000 36000 35000 36000 36000 37000 37000 37000 36000 37000 36000 37000 37000 38000 38000 38000 37000 38000 37000 38000 38000 39000 39000 39000 38000 39000 38000 39000 39000 40000 40000 40000 39000 40000 39000 40000 40000 41000 41000 41000 40000 41000 40000 41000 41000 42000 42000 42000 41000 42000 41000 42000 42000 43000 43000 43000 42000 42000 43000 43000 43000 44000 44000 44000 43000 43000 44000 44000 44000 45000 45000 45000 44000 44000 45000 45000 45000 46000 46000 46000 45000 45000 46000 46000 46000 47000 47000 47000 46000 46000 47000 47000 47000 48000 48000 48000 47000 47000 48000 48604 48604 48603 48000 48000 48604 48604 48000 48000 48604 48604 48604 Done. >>>>> Processing 130819_M01529_0018_2013_16.R1.0ffastatemp (file 7 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_16.R1.0ffastatemp (file 7 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_16.R1.0ffastatemp (file 7 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_16.R1.0ffastatemp (file 7 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_16.R1.0ffastatemp (file 7 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_16.R1.0ffastatemp (file 7 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_16.R1.0ffastatemp (file 7 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_16.R1.0ffastatemp (file 7 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 2000 3000 3000 4000 4000 4000 4000 3000 4000 4000 3000 5000 5000 5000 5000 5000 5000 6000 6000 4000 4000 6000 6000 7000 7000 6000 5000 7000 7000 6000 8000 5000 8000 7000 6000 8000 8000 9000 9000 8000 9000 9000 7000 6000 7000 10000 10000 9000 10000 10000 7000 11000 11000 8000 8000 11000 10000 11000 12000 12000 8000 9000 12000 12000 11000 9000 13000 13000 13000 13000 9000 12000 10000 14000 14000 10000 14000 14000 10000 11000 15000 15000 13000 15000 15000 11000 16000 16000 12000 16000 16000 11000 12000 14000 17000 17000 17000 17000 13000 13000 12000 18000 18000 18000 18000 14000 15000 13000 19000 19000 19000 19000 14000 15000 20000 20000 14000 20000 20000 16000 16000 15000 21000 21000 15000 21000 21000 17000 17000 22000 22000 22000 22000 16000 16000 18000 23000 23000 23000 23000 18000 17000 19000 17000 24000 24000 24000 19000 24000 18000 20000 25000 25000 25000 18000 19000 20000 25000 26000 26000 26000 21000 20000 19000 21000 27000 27000 27000 26000 21000 22000 28000 22000 28000 28000 20000 27000 22000 29000 29000 29000 23000 23000 21000 23000 30000 30000 30000 24000 28000 24000 22000 31000 31000 31000 24000 25000 29000 25000 32000 32000 32000 26000 23000 25000 26000 33000 33000 33000 27000 30000 27000 34000 24000 34000 26000 34000 28000 28000 35000 31000 35000 35000 29000 25000 27000 29000 36000 36000 36000 30000 32000 30000 37000 26000 28000 37000 37000 31000 31000 38000 33000 38000 38000 32000 27000 29000 32000 39000 39000 39000 33000 34000 30000 33000 40000 40000 40000 28000 34000 34000 41000 35000 41000 41000 35000 31000 29000 35000 42000 42000 42000 36000 36000 32000 36000 43000 43000 30000 43000 43307 37000 43307 43307 37000 37000 33000 38000 31000 38000 38000 34000 39000 32000 39000 39000 35000 40000 33000 40000 40000 36000 34000 41000 41000 41000 37000 35000 42000 42000 42000 38000 36000 43000 43307 43000 43000 39000 43307 43307 37000 40000 38000 41000 39000 42000 40000 43000 43307 41000 42000 43000 43307 Done. >>>>> Processing 130819_M01529_0018_2013_17.R1.0ffastatemp (file 8 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_17.R1.0ffastatemp (file 8 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_17.R1.0ffastatemp (file 8 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_17.R1.0ffastatemp (file 8 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_17.R1.0ffastatemp (file 8 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_17.R1.0ffastatemp (file 8 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_17.R1.0ffastatemp (file 8 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_17.R1.0ffastatemp (file 8 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 3000 2000 4000 4000 4000 3000 4000 4000 3000 3000 5000 5000 5000 5000 5000 4000 6000 6000 6000 6000 4000 6000 4000 7000 7000 7000 7000 5000 7000 5000 5000 8000 8000 8000 8000 8000 6000 6000 9000 9000 9000 9000 6000 9000 7000 10000 10000 10000 10000 7000 7000 10000 11000 11000 11000 11000 8000 8000 12000 12000 12000 12000 11000 9000 8000 9000 13000 13000 13000 12000 13000 9000 10000 10000 14000 14000 14000 13000 14000 11000 10000 11000 15000 15000 15000 12000 16000 16000 16000 14000 15000 11000 12000 13000 17000 17000 17000 16000 15000 12000 13000 14000 18000 18000 18000 16000 13000 17000 14000 15000 19000 19000 19000 16000 20000 20000 20000 14000 17000 18000 15000 21000 21000 21000 17000 18000 15000 19000 16000 22000 22000 22000 18000 19000 16000 23000 23000 23000 20000 17000 19000 20000 24000 24000 24000 17000 20000 21000 18000 25000 25000 25000 21000 21000 22000 18000 26000 26000 26000 19000 23000 22000 22000 19000 27000 27000 27000 20000 24000 23000 28000 28000 28000 23000 20000 25000 21000 29000 29000 29000 24000 24000 21000 26000 22000 30000 30000 30000 25000 22000 25000 27000 23000 31000 31000 31000 26000 23000 26000 28000 24000 32000 32000 32000 27000 24000 27000 29000 25000 33000 33000 33000 28000 25000 28000 30000 26000 34000 34000 34000 29000 26000 29000 31000 27000 35000 35000 35000 30000 27000 30000 32000 28000 36000 36000 36000 31000 28000 31000 33000 29000 37000 37000 37000 32000 29000 32000 34000 30000 38000 38000 38000 33000 30000 33000 35000 31000 39000 39000 39000 34000 31000 34000 36000 32000 40000 40000 40000 35000 32000 35000 37000 33000 41000 41000 41000 33000 36000 36000 38000 42000 34000 42000 42000 34000 37000 37000 39000 43000 43000 35000 43000 35000 38000 38000 40000 44000 44000 44000 36000 36000 39000 39000 41000 45000 45000 45000 37000 45196 45197 45196 37000 40000 40000 42000 38000 38000 41000 41000 43000 39000 39000 42000 42000 44000 40000 40000 43000 43000 45000 41000 45196 41000 44000 44000 42000 42000 45000 45000 45196 45197 43000 43000 44000 44000 45000 45000 45196 45197 Done. >>>>> Processing 130819_M01529_0018_2013_18.R1.0ffastatemp (file 9 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_18.R1.0ffastatemp (file 9 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_18.R1.0ffastatemp (file 9 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_18.R1.0ffastatemp (file 9 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_18.R1.0ffastatemp (file 9 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_18.R1.0ffastatemp (file 9 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_18.R1.0ffastatemp (file 9 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_18.R1.0ffastatemp (file 9 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 3000 4000 4000 4000 4000 3000 3000 3000 4000 5000 5000 5000 5000 4000 4000 5000 4000 6000 6000 6000 6000 5000 7000 7000 7000 7000 5000 5000 6000 8000 8000 8000 8000 6000 6000 6000 7000 9000 9000 9000 9000 7000 7000 7000 10000 10000 10000 10000 8000 8000 11000 11000 11000 11000 8000 9000 8000 9000 12000 12000 12000 12000 10000 9000 13000 13000 13000 9000 13000 11000 10000 14000 14000 14000 14000 10000 12000 10000 11000 15000 15000 15000 15000 13000 11000 16000 16000 16000 11000 16000 12000 14000 17000 17000 17000 17000 12000 15000 12000 13000 18000 18000 18000 18000 16000 13000 19000 19000 19000 13000 19000 14000 17000 20000 20000 20000 20000 14000 18000 14000 15000 21000 21000 21000 21000 19000 15000 22000 22000 22000 15000 22000 16000 16000 23000 23000 23000 23000 20000 17000 17000 24000 24000 24000 16000 24000 18000 21000 25000 25000 25000 18000 25000 19000 22000 26000 26000 26000 17000 26000 19000 23000 27000 27000 27000 20000 27000 18000 24000 20000 28000 28000 28000 28000 25000 29000 29000 21000 29000 19000 29000 21000 30000 30000 26000 30000 20000 30000 22000 31000 31000 27000 31000 31000 21000 22000 32000 32000 32000 28000 23000 32000 33000 33000 33000 29000 22000 23000 24000 33000 34000 34000 34000 30000 34000 24000 23000 35000 35000 35000 31000 25000 35000 36000 36000 36000 32000 24000 25000 26000 36000 37000 37000 37000 33000 37000 38000 38000 38000 27000 25000 26000 34000 39000 38000 39000 39000 35000 27000 26000 40000 40000 39000 40000 28000 36000 28000 41000 41000 41000 40000 27000 37000 29000 42000 42000 42000 41000 29000 38000 28000 43000 43000 43000 42000 30000 39000 43646 43646 43646 30000 29000 43000 31000 40000 43646 31000 30000 32000 41000 32000 31000 33000 42000 33000 32000 34000 43000 34000 33000 43646 35000 35000 34000 36000 36000 35000 37000 37000 36000 38000 38000 37000 39000 39000 38000 40000 40000 39000 41000 41000 40000 42000 42000 41000 43000 43000 42000 43646 43646 43000 43646 Done. >>>>> Processing 130819_M01529_0018_2013_19.R1.0ffastatemp (file 10 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_19.R1.0ffastatemp (file 10 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_19.R1.0ffastatemp (file 10 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_19.R1.0ffastatemp (file 10 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_19.R1.0ffastatemp (file 10 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_19.R1.0ffastatemp (file 10 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_19.R1.0ffastatemp (file 10 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_19.R1.0ffastatemp (file 10 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 3000 2000 2000 3000 4000 4000 4000 4000 4000 3000 5000 5000 5000 5000 5000 4000 3000 6000 6000 6000 6000 6000 4000 4000 5000 7000 7000 7000 7000 7000 5000 8000 8000 8000 8000 8000 6000 5000 9000 9000 9000 9000 6000 9000 7000 6000 10000 10000 10000 10000 10000 8000 11000 11000 11000 7000 11000 11000 7000 12000 12000 12000 12000 12000 8000 9000 8000 13000 13000 13000 13000 13000 9000 14000 14000 14000 14000 9000 14000 10000 10000 15000 15000 15000 15000 15000 11000 10000 16000 16000 16000 16000 11000 16000 17000 17000 17000 17000 11000 12000 17000 12000 18000 18000 18000 18000 18000 12000 13000 13000 19000 19000 19000 19000 19000 13000 14000 14000 20000 20000 20000 20000 20000 14000 15000 15000 21000 21000 21000 21000 21000 15000 16000 16000 22000 22000 22000 22000 22000 16000 17000 17000 23000 23000 23000 23000 17000 23000 18000 18000 24000 24000 24000 24000 18000 24000 19000 19000 25000 25000 25000 25000 19000 25000 20000 20000 26000 26000 26000 26000 20000 26000 21000 21000 27000 27000 27000 27000 21000 27000 22000 22000 28000 28000 28000 28000 22000 28000 23000 23000 29000 29000 29000 29000 23000 29000 24000 24000 30000 30000 30000 30000 24000 30000 25000 25000 31000 31000 31000 31000 25000 31000 26000 26000 32000 32000 32000 32000 26000 32000 27000 27000 33000 33000 33000 33000 27000 28000 33000 28000 34000 34000 34000 34000 28000 29000 34000 29000 35000 35000 35000 35000 29000 30000 35000 30000 36000 36000 36000 36000 30000 31000 36000 31000 37000 37000 37000 37000 31000 32000 37000 32000 38000 38000 38000 38000 32000 33000 38000 33000 39000 39000 39000 39000 33000 34000 39000 34000 40000 40000 40000 40000 34000 35000 40000 35000 41000 41000 41000 41000 35000 36000 41000 36000 42000 42000 42000 42000 36000 37000 42000 43000 37000 43000 43000 43000 37000 38000 43000 44000 44000 38000 44000 38000 44000 39000 44000 45000 45000 45000 39000 39000 45000 40000 45000 46000 46000 46000 40000 40000 46000 41000 47000 46000 47000 47000 41000 41000 47000 42000 48000 48000 47000 48000 42000 42000 48000 43000 49000 49000 49000 48000 43000 43000 49000 50000 44000 50000 50000 49000 44000 44000 50000 51000 51000 45000 51000 50000 45000 45000 51000 52000 46000 52000 51000 46000 52000 46000 52000 52568 52567 52567 52568 47000 52000 47000 47000 52568 48000 48000 48000 49000 49000 49000 50000 50000 50000 51000 51000 51000 52000 52000 52000 52568 52567 52568 Done. >>>>> Processing 130819_M01529_0018_2013_2.R1.0ffastatemp (file 11 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_2.R1.0ffastatemp (file 11 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_2.R1.0ffastatemp (file 11 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_2.R1.0ffastatemp (file 11 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_2.R1.0ffastatemp (file 11 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_2.R1.0ffastatemp (file 11 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_2.R1.0ffastatemp (file 11 of 20) <<<<< Making contigs... 1000 2000 2000 Done. >>>>> Processing 130819_M01529_0018_2013_2.R1.0ffastatemp (file 11 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 3000 3000 3000 3000 3000 3000 2000 4000 4000 4000 2000 4000 4000 4000 5000 5000 5000 5000 5000 5000 3000 6000 6000 6000 6000 6000 3000 6000 7000 7000 7000 7000 7000 7000 4000 8000 8000 8000 8000 8000 4000 8000 9000 9000 9000 9000 9000 9000 5000 10000 10000 10000 10000 10000 5000 10000 11000 11000 11000 11000 11000 11000 6000 6000 12000 12000 12000 12000 12000 12000 7000 7000 13000 13000 13000 13000 13000 13000 8000 8000 14000 14000 14000 14000 14000 14000 9000 9000 15000 15000 15000 15000 15000 15000 10000 10000 16000 16000 16000 16000 16000 16000 11000 11000 17000 17000 17000 17000 17000 17000 12000 12000 18000 18000 18000 18000 18000 18000 13000 13000 19000 19000 19000 19000 19000 19000 14000 14000 20000 20000 20000 20000 20000 20000 15000 15000 21000 21000 21000 21000 21000 21000 16000 16000 22000 22000 22000 22000 22000 22000 17000 17000 23000 23000 23000 23000 23000 23000 18000 18000 24000 24000 24000 24000 24000 24000 19000 19000 25000 25000 25000 25000 25000 25000 20000 20000 26000 26000 26000 26000 26000 26000 21000 21000 27000 27000 27000 27000 27000 27000 22000 22000 28000 28000 28000 28000 28000 28000 23000 23000 29000 29000 29000 29000 29000 29000 24000 24000 30000 30000 30000 30000 30000 30000 25000 25000 31000 31000 31000 31000 31000 31000 26000 26000 32000 32000 32000 32000 32000 32000 27000 27000 33000 33000 33000 33000 33000 33000 28000 28000 34000 34000 34000 34000 34000 34000 29000 29000 35000 35000 35000 35000 35000 35000 30000 30000 36000 36000 36000 36000 36000 36000 31000 31000 37000 37000 37000 37000 37000 37000 32000 32000 38000 38000 38000 38000 38000 38000 33000 33000 39000 39000 39000 39000 39000 39000 34000 34000 40000 40000 40000 40000 40000 40000 35000 35000 41000 41000 41000 41000 41000 41000 36000 36000 42000 42000 42000 42000 42000 42000 37000 37000 43000 43000 43000 43000 43000 43000 38000 38000 44000 44000 44000 44000 44000 44000 39000 39000 45000 45000 45000 45000 45000 45000 40000 40000 46000 46000 46000 46000 46000 41000 46000 41000 47000 47000 47000 47000 42000 47000 47000 42000 48000 48000 48000 48234 48235 48234 48000 43000 48000 48000 48235 48234 48234 43000 44000 44000 45000 45000 46000 46000 47000 47000 48000 48234 48000 48235 Done. >>>>> Processing 130819_M01529_0018_2013_20.R1.0ffastatemp (file 12 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_20.R1.0ffastatemp (file 12 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_20.R1.0ffastatemp (file 12 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_20.R1.0ffastatemp (file 12 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_20.R1.0ffastatemp (file 12 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_20.R1.0ffastatemp (file 12 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_20.R1.0ffastatemp (file 12 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_20.R1.0ffastatemp (file 12 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 3000 2000 2000 4000 4000 4000 4000 4000 3000 3000 3000 5000 5000 5000 5000 5000 4000 4000 6000 6000 6000 6000 6000 4000 7000 7000 7000 7000 7000 5000 5000 5000 8000 8000 8000 8000 8000 6000 6000 9000 9000 9000 9000 9000 6000 10000 10000 10000 10000 10000 7000 7000 7000 11000 11000 11000 11000 11000 8000 8000 12000 12000 12000 12000 12000 8000 13000 13000 13000 13000 13000 9000 9000 9000 14000 14000 14000 14000 10000 14000 10000 15000 15000 15000 15000 10000 11000 16000 16000 16000 15000 16000 11000 12000 11000 17000 17000 17000 17000 16000 12000 18000 18000 18000 18000 13000 12000 17000 19000 13000 19000 19000 19000 13000 14000 20000 20000 20000 18000 20000 14000 15000 14000 21000 21000 21000 21000 15000 19000 15000 22000 22000 22000 22000 16000 16000 23000 23000 23000 20000 23000 16000 17000 24000 24000 24000 24000 17000 21000 18000 17000 25000 25000 25000 25000 19000 22000 18000 26000 26000 26000 18000 26000 20000 23000 19000 27000 27000 27000 19000 27000 21000 24000 20000 28000 28000 28000 20000 28000 22000 25000 21000 29000 29000 29000 21000 29000 23000 22000 26000 30000 30000 30000 22000 30000 24000 23000 27000 31000 31000 31000 23000 31000 25000 24000 28000 32000 32000 32000 24000 32000 25000 26000 29000 33000 33000 33000 25000 33000 26000 27000 30000 34000 34000 34000 26000 34000 27000 28000 31000 35000 35000 35000 27000 35000 28000 29000 32000 36000 36000 36000 28000 36000 29000 30000 33000 37000 37000 37000 29000 37000 30000 31000 34000 38000 38000 38000 30000 38000 31000 32000 39000 35000 39000 39000 31000 39000 32000 33000 40000 36000 40000 40000 32000 40000 33000 34000 41000 41000 37000 41000 33000 41000 34000 42000 35000 42000 38000 42000 34000 42000 35000 43000 36000 43000 43000 39000 35000 43000 36000 44000 44000 37000 44000 40000 36000 44000 37000 45000 45000 45000 38000 41000 45259 37000 45259 45258 45000 38000 45259 39000 42000 38000 39000 40000 43000 39000 40000 41000 44000 40000 41000 42000 45000 41000 45259 42000 43000 42000 43000 44000 43000 44000 45000 44000 45259 45000 45259 45000 45259 Done. >>>>> Processing 130819_M01529_0018_2013_23.R1.0ffastatemp (file 13 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_23.R1.0ffastatemp (file 13 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_23.R1.0ffastatemp (file 13 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_23.R1.0ffastatemp (file 13 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_23.R1.0ffastatemp (file 13 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_23.R1.0ffastatemp (file 13 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_23.R1.0ffastatemp (file 13 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_23.R1.0ffastatemp (file 13 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 2000 2000 3000 4000 4000 4000 3000 4000 3000 3000 5000 5000 5000 4000 5000 4000 4000 6000 6000 6000 6000 5000 4000 5000 5000 7000 7000 7000 7000 6000 6000 5000 8000 8000 8000 8000 7000 6000 9000 7000 9000 9000 9000 8000 6000 10000 8000 10000 10000 7000 10000 9000 11000 11000 9000 11000 11000 7000 8000 10000 12000 12000 10000 12000 12000 8000 13000 13000 13000 13000 9000 11000 11000 9000 14000 14000 14000 14000 12000 10000 10000 15000 15000 15000 15000 12000 11000 16000 16000 16000 13000 16000 11000 12000 13000 17000 17000 17000 17000 13000 12000 14000 14000 18000 18000 18000 18000 15000 19000 19000 19000 13000 19000 15000 14000 16000 20000 20000 20000 14000 20000 17000 21000 21000 21000 15000 21000 16000 15000 18000 22000 22000 22000 16000 22000 19000 23000 23000 23000 17000 23000 17000 16000 20000 24000 24000 24000 18000 24000 25000 21000 25000 25000 19000 25000 18000 17000 26000 26000 26000 22000 20000 26000 27000 27000 27000 23000 21000 27000 19000 28000 28000 28000 18000 24000 22000 28000 29000 29000 29000 25000 23000 29000 20000 30000 30000 30000 26000 19000 24000 30000 31000 31000 31000 27000 25000 31000 32000 32000 32000 21000 28000 20000 26000 32000 33000 33000 33000 29000 27000 33000 34000 34000 34000 22000 30000 21000 28000 34000 35000 35000 35000 31000 29000 35000 36000 36000 36000 23000 32000 30000 22000 36000 37000 37000 37000 33000 31000 37000 38000 38000 38000 24000 34000 32000 23000 39000 39000 39000 38000 35000 33000 40000 40000 40000 39000 25000 36000 34000 24000 41000 41000 41000 40000 37000 35000 42000 42005 42000 42005 42000 42005 41000 26000 25000 38000 36000 42000 42006 27000 26000 39000 37000 28000 27000 40000 38000 29000 28000 41000 39000 30000 29000 42000 42005 40000 31000 30000 41000 32000 31000 42000 42005 33000 32000 34000 33000 35000 34000 36000 35000 37000 36000 38000 37000 39000 38000 40000 39000 41000 40000 42000 42005 41000 42000 42006 Done. >>>>> Processing 130819_M01529_0018_2013_24.R1.0ffastatemp (file 14 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_24.R1.0ffastatemp (file 14 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_24.R1.0ffastatemp (file 14 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_24.R1.0ffastatemp (file 14 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_24.R1.0ffastatemp (file 14 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_24.R1.0ffastatemp (file 14 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_24.R1.0ffastatemp (file 14 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 Done. >>>>> Processing 130819_M01529_0018_2013_24.R1.0ffastatemp (file 14 of 20) <<<<< Making contigs... 1000 2000 2000 3000 3000 3000 3000 3000 2000 3000 4000 4000 4000 4000 3000 4000 3000 5000 5000 5000 5000 4000 5000 4000 4000 6000 6000 6000 6000 5000 7000 7000 7000 7000 6000 5000 5000 6000 8000 8000 8000 8000 6000 7000 6000 7000 9000 9000 9000 9000 7000 10000 10000 8000 10000 10000 8000 7000 8000 11000 11000 11000 11000 9000 9000 8000 12000 12000 12000 9000 10000 12000 10000 9000 13000 13000 13000 11000 10000 11000 10000 13000 14000 14000 14000 12000 12000 11000 15000 15000 15000 11000 13000 13000 16000 14000 16000 16000 12000 12000 14000 14000 17000 17000 17000 13000 15000 15000 18000 18000 18000 13000 15000 16000 14000 19000 19000 19000 16000 16000 14000 15000 17000 20000 20000 20000 17000 17000 15000 21000 16000 21000 21000 18000 18000 18000 22000 22000 22000 17000 19000 16000 19000 23000 23000 23000 19000 18000 20000 17000 24000 24000 20000 24000 20000 19000 21000 25000 25000 25000 21000 18000 20000 21000 26000 26000 26000 22000 22000 21000 19000 27000 27000 27000 22000 23000 22000 28000 28000 28000 23000 20000 24000 23000 23000 29000 29000 29000 25000 24000 24000 21000 30000 30000 30000 24000 26000 25000 31000 31000 31000 25000 22000 27000 26000 25000 32000 32000 32000 26000 28000 27000 33000 33000 23000 33000 29000 26000 28000 27000 34000 34000 34000 24000 29000 28000 35000 35000 35000 27000 30000 25000 30000 36000 36000 36000 29000 26000 28000 31000 31000 37000 37000 37000 27000 30000 29000 32000 38000 38000 38000 32000 28000 30000 39000 39000 39000 31000 33000 33000 31000 29000 40000 40000 40000 32000 34000 32000 41000 30000 41000 41000 34000 33000 42000 35000 42000 42000 33000 31000 34000 35000 43000 43000 43000 35000 36000 32000 34000 36000 44000 44000 44000 36000 35000 37000 33000 37000 45000 45000 45000 37000 45345 45345 45345 38000 36000 34000 38000 38000 39000 37000 35000 39000 39000 40000 38000 40000 36000 40000 41000 39000 41000 37000 41000 42000 40000 42000 38000 42000 43000 43000 41000 39000 43000 44000 44000 42000 40000 44000 45000 45000 43000 41000 45345 45345 45000 45346 44000 42000 45000 43000 45345 44000 45000 45345 Done. >>>>> Processing 130819_M01529_0018_2013_3.R1.0ffastatemp (file 15 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_3.R1.0ffastatemp (file 15 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_3.R1.0ffastatemp (file 15 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_3.R1.0ffastatemp (file 15 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_3.R1.0ffastatemp (file 15 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_3.R1.0ffastatemp (file 15 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_3.R1.0ffastatemp (file 15 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_3.R1.0ffastatemp (file 15 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 3000 3000 3000 3000 4000 4000 4000 4000 4000 4000 4000 4000 5000 5000 5000 5000 5000 5000 5000 5000 6000 6000 6000 6000 6000 6000 6000 6000 7000 7000 7000 7000 7000 7000 7000 7000 8000 8000 8000 8000 8000 8000 8000 8000 9000 9000 9000 9000 9000 9000 9000 9000 10000 10000 10000 10000 10000 10000 10000 10000 11000 11000 11000 11000 11000 11000 11000 11000 12000 12000 12000 12000 12000 12000 12000 12000 13000 13000 13000 13000 13000 13000 13000 13000 14000 14000 14000 14000 14000 14000 14000 14000 15000 15000 15000 15000 15000 15000 15000 15000 16000 16000 16000 16000 16000 16000 16000 16000 17000 17000 17000 17000 17000 17000 17000 17000 18000 18000 18000 18000 18000 18000 18000 18000 19000 19000 19000 19000 19000 19000 19000 19000 20000 20000 20000 20000 20000 20000 20000 20000 21000 21000 21000 21000 21000 21000 21000 21000 22000 22000 22000 22000 22000 22000 22000 22000 23000 23000 23000 23000 23000 23000 23000 23000 24000 24000 24000 24000 24000 24000 24000 24000 25000 25000 25000 25000 25000 25000 25000 25000 26000 26000 26000 26000 26000 26000 26000 26000 27000 27000 27000 27000 27000 27000 27000 27000 28000 28000 28000 28000 28000 28000 28000 28000 29000 29000 29000 29000 29000 29000 29000 29000 30000 30000 30000 30000 30000 30000 30000 30000 31000 31000 31000 31000 31000 31000 31000 31000 32000 32000 32000 32000 32000 32000 32000 32000 33000 33000 33000 33000 33000 33000 33000 33000 34000 34000 34000 34000 34000 34000 34000 34000 35000 35000 35000 35000 35000 35000 35000 35000 36000 36000 36000 36000 36000 36000 36000 36000 37000 37000 37000 37000 37000 37000 37000 37000 38000 38000 38000 38000 38000 38000 38000 38000 39000 39000 39000 39000 39000 39000 39000 39000 40000 40000 40000 40000 40000 40000 40000 40000 41000 41000 41000 41000 41000 41000 41000 41000 42000 42000 42000 42000 42000 42000 42000 42000 43000 43000 43000 43000 43000 43000 43000 43000 44000 44000 44000 44000 44000 44000 44000 44000 45000 45000 45000 45000 45000 45000 45000 45000 46000 46000 46000 46000 46000 46000 46000 46000 47000 47000 47000 47000 47000 47000 47000 47000 48000 48000 48000 48000 48000 48000 48000 48000 49000 49000 49000 49000 49000 49000 49000 49000 50000 50000 50059 50000 50059 50059 50000 50059 50000 50000 50059 50000 50000 50059 50058 50058 Done. >>>>> Processing 130819_M01529_0018_2013_5.R1.0ffastatemp (file 16 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_5.R1.0ffastatemp (file 16 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_5.R1.0ffastatemp (file 16 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_5.R1.0ffastatemp (file 16 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_5.R1.0ffastatemp (file 16 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_5.R1.0ffastatemp (file 16 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_5.R1.0ffastatemp (file 16 of 20) <<<<< Making contigs... 1000 2000 2000 Done. >>>>> Processing 130819_M01529_0018_2013_5.R1.0ffastatemp (file 16 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 3000 3000 3000 2000 3000 3000 3000 3000 4000 4000 4000 3000 4000 4000 4000 4000 5000 5000 5000 4000 5000 5000 6000 6000 6000 5000 5000 7000 7000 5000 7000 6000 6000 6000 6000 8000 8000 8000 7000 6000 7000 7000 9000 7000 9000 9000 8000 8000 8000 10000 7000 10000 10000 8000 9000 9000 11000 8000 11000 9000 11000 9000 10000 12000 12000 12000 10000 9000 10000 10000 13000 13000 13000 11000 11000 11000 10000 14000 11000 14000 14000 12000 12000 12000 15000 15000 12000 15000 11000 13000 16000 16000 16000 13000 13000 12000 13000 14000 17000 17000 17000 13000 14000 15000 14000 18000 18000 18000 14000 14000 16000 15000 19000 15000 19000 19000 15000 16000 15000 20000 16000 20000 20000 17000 16000 21000 17000 16000 21000 17000 21000 17000 22000 22000 18000 22000 18000 18000 17000 23000 23000 19000 23000 18000 19000 19000 18000 24000 24000 24000 20000 20000 19000 20000 25000 25000 19000 25000 21000 26000 21000 26000 20000 26000 21000 20000 22000 27000 27000 27000 22000 21000 23000 22000 21000 28000 28000 28000 24000 22000 23000 29000 23000 29000 22000 29000 25000 30000 23000 30000 30000 24000 24000 23000 26000 31000 31000 31000 24000 25000 27000 24000 25000 32000 32000 32000 28000 25000 33000 26000 26000 33000 33000 25000 29000 34000 34000 34000 27000 26000 27000 26000 30000 35000 35000 35000 28000 31000 27000 27000 28000 36000 36000 36000 29000 32000 37000 28000 29000 37000 37000 28000 30000 38000 33000 38000 38000 30000 29000 39000 29000 34000 31000 39000 39000 31000 40000 35000 30000 40000 40000 30000 32000 32000 41000 31000 41000 41000 36000 31000 33000 42000 33000 42000 42000 32000 32000 37000 43000 34000 34000 43000 43000 44000 33000 38000 33000 35000 35000 44000 44000 45000 45267 36000 36000 45000 45000 45268 39000 34000 45268 34000 37000 37000 35000 40000 35000 38000 38000 36000 41000 36000 39000 39000 37000 42000 37000 40000 40000 38000 43000 38000 41000 41000 39000 44000 39000 42000 42000 40000 45000 40000 45268 43000 43000 41000 41000 44000 44000 42000 42000 45000 45000 45268 43000 45268 43000 44000 44000 45000 45000 45268 45268 Done. >>>>> Processing 130819_M01529_0018_2013_6.R1.0ffastatemp (file 17 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_6.R1.0ffastatemp (file 17 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_6.R1.0ffastatemp (file 17 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_6.R1.0ffastatemp (file 17 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_6.R1.0ffastatemp (file 17 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_6.R1.0ffastatemp (file 17 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 Done. >>>>> Processing 130819_M01529_0018_2013_6.R1.0ffastatemp (file 17 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_6.R1.0ffastatemp (file 17 of 20) <<<<< Making contigs... 1000 3000 3000 3000 3000 3000 3000 4000 4000 4000 4000 4000 4000 2000 2000 5000 5000 5000 5000 5000 5000 6000 6000 6000 6000 6000 6000 3000 3000 7000 7000 7000 7000 7000 7000 8000 8000 8000 8000 8000 8000 4000 4000 9000 9000 9000 9000 9000 9000 10000 10000 10000 10000 10000 10000 5000 5000 11000 11000 11000 11000 11000 11000 12000 12000 12000 12000 12000 12000 6000 6000 13000 13000 13000 13000 13000 13000 7000 7000 14000 14000 14000 14000 14000 14000 15000 15000 15000 15000 15000 8000 8000 16000 16000 16000 16000 16000 15000 9000 17000 9000 17000 17000 17000 17000 16000 18000 18000 18000 18000 18000 10000 10000 19000 19000 19000 19000 19000 17000 11000 20000 20000 20000 11000 20000 20000 18000 21000 21000 21000 12000 21000 21000 12000 22000 22000 22000 22000 22000 19000 13000 23000 23000 23000 23000 23000 20000 13000 24000 24000 24000 24000 24000 14000 14000 25000 25000 25000 21000 25000 25000 26000 26000 15000 26000 26000 26000 15000 22000 27000 27000 27000 27000 27000 16000 16000 28000 28000 28000 23000 28000 28000 29000 29000 29000 17000 29000 29000 17000 24000 30000 30000 30000 30000 30000 18000 31000 31000 25000 31000 18000 31000 31000 32000 32000 32000 26000 19000 32000 32000 33000 19000 33000 33000 33000 33000 27000 34000 34000 34000 20000 20000 34000 34000 35000 35000 35000 21000 35000 35000 28000 21000 36000 36000 36000 36000 36000 37000 37000 37000 29000 22000 22000 37000 37000 38000 38000 38000 30000 23000 38000 38000 39000 39000 39000 23000 39000 40000 39000 40000 40000 24000 31000 24000 41000 40000 41000 40000 41000 25000 32000 25000 42000 42000 41000 41000 42000 26000 33000 26000 43000 43000 42000 43000 27000 42000 34000 27000 43467 43467 43467 28000 43000 43000 35000 28000 43467 43467 29000 36000 29000 30000 37000 30000 31000 38000 31000 32000 39000 32000 33000 40000 33000 34000 41000 34000 35000 42000 35000 36000 43000 36000 43467 37000 37000 38000 38000 39000 39000 40000 40000 41000 41000 42000 42000 43000 43467 43000 43467 Done. >>>>> Processing 130819_M01529_0018_2013_7.R1.0ffastatemp (file 18 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_7.R1.0ffastatemp (file 18 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_7.R1.0ffastatemp (file 18 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_7.R1.0ffastatemp (file 18 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_7.R1.0ffastatemp (file 18 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_7.R1.0ffastatemp (file 18 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 Done. >>>>> Processing 130819_M01529_0018_2013_7.R1.0ffastatemp (file 18 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_7.R1.0ffastatemp (file 18 of 20) <<<<< Making contigs... 1000 3000 3000 3000 3000 3000 3000 2000 2000 4000 4000 4000 4000 4000 4000 3000 5000 5000 5000 5000 5000 3000 6000 6000 6000 4000 6000 6000 5000 7000 7000 7000 5000 7000 7000 4000 8000 8000 8000 8000 8000 6000 6000 9000 9000 9000 9000 9000 5000 7000 7000 10000 10000 10000 10000 10000 6000 11000 11000 11000 11000 11000 8000 8000 12000 12000 12000 12000 12000 7000 9000 9000 13000 13000 13000 13000 13000 10000 14000 14000 14000 14000 14000 8000 10000 15000 15000 15000 15000 15000 11000 9000 16000 16000 16000 11000 16000 16000 17000 10000 12000 17000 17000 17000 17000 12000 18000 18000 18000 18000 18000 13000 11000 19000 19000 19000 19000 19000 13000 20000 12000 20000 14000 20000 20000 20000 14000 21000 21000 21000 21000 21000 13000 15000 22000 22000 22000 15000 22000 22000 23000 14000 23000 23000 23000 23000 16000 16000 24000 24000 24000 24000 24000 15000 25000 17000 25000 25000 17000 25000 25000 26000 26000 26000 16000 26000 26000 18000 27000 18000 27000 27000 17000 27000 28000 19000 28000 28000 18000 27000 28000 19000 29000 20000 29000 29000 19000 29000 30000 21000 30000 30000 28000 20000 20000 30000 31000 31000 31000 21000 22000 31000 32000 21000 29000 32000 32000 22000 32000 33000 33000 33000 23000 23000 22000 30000 34000 33000 34000 34000 24000 24000 23000 31000 35000 34000 35000 35000 25000 25000 24000 32000 36000 35000 36000 36000 26000 26000 36795 25000 33000 36000 36795 36795 27000 27000 26000 36795 34000 28000 28000 27000 35000 29000 29000 28000 36000 30000 30000 36796 29000 31000 31000 30000 32000 32000 31000 33000 33000 32000 34000 34000 33000 35000 35000 34000 36000 36000 35000 36795 36795 36000 36795 Done. >>>>> Processing 130819_M01529_0018_2013_8.R1.0ffastatemp (file 19 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_8.R1.0ffastatemp (file 19 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_8.R1.0ffastatemp (file 19 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_8.R1.0ffastatemp (file 19 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_8.R1.0ffastatemp (file 19 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_8.R1.0ffastatemp (file 19 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_8.R1.0ffastatemp (file 19 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_8.R1.0ffastatemp (file 19 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 2000 3000 2000 4000 4000 4000 4000 4000 3000 3000 3000 5000 5000 5000 5000 5000 4000 4000 6000 6000 6000 6000 6000 4000 7000 7000 7000 7000 7000 5000 5000 5000 8000 8000 8000 8000 8000 6000 9000 9000 6000 9000 9000 9000 6000 10000 10000 10000 10000 10000 7000 7000 7000 11000 11000 11000 11000 11000 8000 8000 12000 12000 12000 12000 12000 8000 9000 13000 13000 13000 13000 9000 13000 9000 10000 14000 14000 14000 14000 10000 11000 15000 15000 14000 10000 15000 15000 11000 12000 16000 16000 15000 11000 16000 16000 12000 13000 17000 17000 16000 12000 17000 17000 13000 14000 18000 18000 17000 13000 18000 18000 14000 15000 19000 18000 19000 14000 19000 19000 15000 16000 20000 19000 20000 15000 20000 20000 16000 17000 21000 20000 21000 16000 21000 21000 17000 18000 22000 21000 22000 17000 22000 22000 18000 19000 22000 23000 18000 23000 23000 23000 19000 20000 23000 24000 19000 24000 24000 24000 20000 21000 24000 25000 20000 25000 25000 25000 21000 22000 25000 26000 21000 26000 26000 26000 22000 23000 26000 27000 22000 27000 27000 27000 23000 24000 27000 28000 23000 28000 28000 28000 24000 25000 28000 29000 29000 24000 29000 29000 25000 26000 29000 30000 30000 25000 30000 30000 26000 27000 31000 31000 30000 26000 31000 31000 27000 28000 32000 32000 31000 27000 32000 32000 28000 29000 33000 33000 32000 28000 33000 33000 29000 30000 34000 34000 33000 29000 34000 34000 30000 31000 35000 35000 34000 30000 35000 35000 31000 36000 32000 36000 35000 36000 31000 36000 32000 37000 37000 33000 37000 36000 32000 37000 33000 38000 38000 34000 38000 37000 33000 38000 34000 39000 39000 39000 35000 38000 34000 39000 35000 40000 40000 40000 36000 39000 35000 40000 36000 41000 41000 41000 37000 40000 36000 41000 37000 42000 42000 42000 41000 38000 42203 42202 37000 42202 42000 42202 38000 42000 39000 38000 42203 39000 40000 39000 40000 41000 40000 41000 42000 41000 42203 42000 42203 42000 42202 Done. >>>>> Processing 130819_M01529_0018_2013_9.R1.0ffastatemp (file 20 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_9.R1.0ffastatemp (file 20 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_9.R1.0ffastatemp (file 20 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_9.R1.0ffastatemp (file 20 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_9.R1.0ffastatemp (file 20 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_9.R1.0ffastatemp (file 20 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_9.R1.0ffastatemp (file 20 of 20) <<<<< Making contigs... 1000 Done. >>>>> Processing 130819_M01529_0018_2013_9.R1.0ffastatemp (file 20 of 20) <<<<< Making contigs... 1000 2000 2000 2000 2000 2000 2000 2000 3000 3000 3000 3000 3000 2000 3000 4000 4000 4000 4000 4000 3000 5000 5000 5000 5000 5000 3000 4000 4000 6000 6000 6000 6000 6000 4000 7000 7000 7000 7000 5000 7000 5000 5000 8000 8000 8000 8000 8000 6000 6000 9000 9000 9000 9000 9000 6000 10000 10000 10000 10000 10000 7000 7000 7000 11000 11000 11000 11000 11000 8000 12000 12000 12000 12000 8000 8000 12000 13000 13000 9000 13000 13000 13000 9000 9000 14000 14000 10000 14000 14000 14000 15000 15000 11000 15000 10000 10000 15000 15000 16000 16000 12000 16000 11000 11000 17000 17000 13000 17000 16000 16000 12000 18000 18000 14000 18000 12000 13000 17000 17000 19000 19000 15000 19000 14000 13000 20000 20000 16000 20000 18000 18000 15000 21000 21000 21000 17000 14000 16000 19000 19000 22000 22000 22000 18000 15000 23000 23000 20000 23000 19000 20000 17000 16000 24000 24000 24000 20000 21000 18000 21000 25000 25000 17000 25000 21000 19000 22000 26000 26000 26000 22000 18000 22000 20000 23000 27000 27000 27000 23000 19000 28000 28000 24000 28000 24000 23000 21000 20000 29000 29000 29000 25000 25000 24000 22000 30000 30000 21000 30000 26000 26000 25000 31000 31000 31000 27000 22000 23000 32000 32000 32000 26000 27000 28000 24000 23000 33000 33000 33000 29000 28000 27000 25000 34000 34000 34000 30000 24000 26000 35000 35000 35000 28000 29000 31000 27000 36000 36000 36000 25000 32000 30000 29000 37000 37000 28000 37000 33000 26000 38000 38000 38000 29000 30000 31000 34000 27000 39000 39000 39000 31000 35000 30000 32000 28000 40000 40000 40000 32000 36000 31000 33000 29000 41000 41000 41000 33000 37000 32000 34000 30000 42000 42000 42000 34000 38000 33000 35000 31000 43000 43000 43000 35000 39000 34000 36000 32000 44000 44000 44000 36000 40000 35000 37000 33000 45000 45000 45000 37000 45665 45664 41000 45664 36000 38000 34000 38000 42000 37000 39000 35000 39000 43000 38000 40000 36000 40000 39000 44000 41000 37000 41000 40000 45000 38000 42000 42000 45665 41000 39000 43000 43000 42000 40000 44000 44000 43000 41000 45000 45000 45664 44000 45665 42000 45000 43000 45664 44000 45000 45665 Done. It took 1405 secs to process 7457016 sequences. Group count: 2013-1 498777 2013-11 359895 2013-12 413120 2013-13 372646 2013-14 391616 2013-15 388831 2013-16 346456 2013-17 361571 2013-18 349168 2013-19 420541 2013-2 385875 2013-20 362071 2013-23 336042 2013-24 362761 2013-3 400470 2013-5 362143 2013-6 347736 2013-7 294361 2013-8 337620 2013-9 365316 Total of all groups is 7457016 Output File Names: FieldTwo2013.trim.contigs.fasta FieldTwo2013.contigs.report FieldTwo2013.scrap.contigs.fasta FieldTwo2013.contigs.groups [WARNING]: your sequence names contained ':'. I changed them to '_' to avoid problems in your downstream analysis. mothur > system(/bin/echo "starting summary.seqs `date`" >>/dev/stderr) mothur > summary.seqs(fasta=current) Using FieldTwo2013.trim.contigs.fasta as input file for the fasta parameter. Using 8 processors. Start End NBases Ambigs Polymer NumSeqs Minimum: 1 151 151 0 3 1 2.5%-tile: 1 252 252 0 4 186426 25%-tile: 1 253 253 0 4 1864255 Median: 1 253 253 0 4 3728509 75%-tile: 1 253 253 0 5 5592763 97.5%-tile: 1 254 254 4 8 7270591 Maximum: 1 303 302 154 151 7457016 Mean: 1 253.292 253.292 0.480848 4.7864 # of Seqs: 7457016 Output File Names: FieldTwo2013.trim.contigs.summary mothur > system(/bin/ls -ltr > mothur-output-files-2.txt) mothur > quit()