rRNA Blast searches

Up to the best 10 hits to the rRNA database are shown below.

Entries with semi-colons are from the Silva rRNA database. Entries with double colons in them are from the University of Texas database.

Count Percent of reads Hit
2195 0.2% DISTINCT (or unique) QUERIES. This is the overall match rate to the rRNA database.
63 0.0% Bacteria;Actinobacteria;Rubrobacteria;Solirubrobacterales;Conexibacteraceae;Conexibacter;ConexibacterCP001854.3761310.3764306
50 0.0% Bacteria;Actinobacteria;Actinobacteria;Propionibacteriales;Nocardioidaceae;Nocardioides;NocardioidesCP000509.2115459.2118586
50 0.0% Bacteria;Actinobacteria;Actinobacteria;Propionibacteriales;Nocardioidaceae;Nocardioides;NocardioidesCP000509.2640518.2643645
37 0.0% Bacteria;Actinobacteria;Actinobacteria;Propionibacteriales;Nocardioidaceae;NocardioidaceaeADVI01000011.55994.59090
36 0.0% Conexibacter_woesei::AJ440238::00017
36 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260704.8144.11130
35 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260700.17519.20515
34 0.0% Bacteria;Acidobacteria;23k22;unculturedGT260712.22677.25665
31 0.0% Bacteria;Acidobacteria;23k22;unculturedAY281356.9179.12165
31 0.0% uncultured_Acidobacteria_bacterium::AY281356::01199

The first column is the count of the number of queries -- reads, contigs, etc. -- that match to the rRNA entry in the database. The second column is the percentage of the total queries (1377433) of minimum length 50 that were used. These queries represent 2 percent of the total starting queries. The blast evalue was 0.00000001 and up to 5 descriptions were retained for each hit.There were 2195 distinct queries. A given query could match to multiple rRNA database entries and thus be counted multiple times. However when summing up the queries for an overall match number any given query is counted once.

729176 lines of Blast output were examined of which 707923 lines had aligments of at least 50 bases.

Link to all hits