Unaligned_filtered

Directories and files

Directories (mostly accessions/samples)

QC -- Quality Control from the FastQC program

Files .. if large you may wish to save them first

Size Name
18G 002004_Nocton-Corn_CGTACG_R1_filtered.fastq
85K 002004_Nocton-Corn_CGTACG_R1_filtered.fastq.phix.blastn
359M 002004_Nocton-Corn_CGTACG_R1_filtered.fastq.random
209M 002004_Nocton-Corn_CGTACG_R1_filtered.fastq.random2
129M 002004_Nocton-Corn_CGTACG_R1_filtered.fastq.rrna.blastn
2K 002004_Nocton-Corn_CGTACG_R1_filtered.fastq.stats
18G 002004_Nocton-Corn_CGTACG_R2_filtered.fastq
2K 002004_Nocton-Corn_CGTACG_R2_filtered.fastq.stats
317 do_blast.stderr.stdout.txt
2K phiX_blast.stats.html
2K phiX_blast.stats.html.all.html
1K phiX_blast.stats.nohead
485 phiX_blast.stats.txt
3K rRNA_blast.stats.html
8M rRNA_blast.stats.html.all.html
2K rRNA_blast.stats.nohead
6M rRNA_blast.stats.txt
0 rrna_summarize.stderr.stdout.txt

FastA, FastQ and SAM/BAM files in current directory and sub-directories

Files

Total Seqs/Reads Nucleotides Range Mean N50 File name
71,944,599 7,148,182,659 30-101 99 101 002004_Nocton-Corn_CGTACG_R1_filtered.fastq
71,944,599 7,157,497,754 30-101 99 101 002004_Nocton-Corn_CGTACG_R2_filtered.fastq