FastQCFastQC Report
Thu 4 Oct 2012
002004_Nocton-Corn_CGTACG_L002_R1_009.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002004_Nocton-Corn_CGTACG_L002_R1_009.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 4000000
Filtered Sequences 0
Sequence length 101
%GC 61

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[WARN] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
AAAAA 373620 3.589794 4.171567 70-74
TTTTT 370770 3.5641072 3.9923713 90-94
Produced by FastQC (version 0.10.0)