FastQCFastQC Report
Thu 4 Oct 2012
002002_Airport_GTGGCC_L003_R1_014.fastq.gz

Summary

[OK] Basic Statistics

Measure Value
Filename 002002_Airport_GTGGCC_L003_R1_014.fastq.gz
File type Conventional base calls
Encoding Sanger / Illumina 1.9
Total Sequences 2150072
Filtered Sequences 0
Sequence length 101
%GC 62

[OK] Per base sequence quality

Per base quality graph

[OK] Per sequence quality scores

Per Sequence quality graph

[WARN] Per base sequence content

Per base sequence content

[WARN] Per base GC content

Per base GC content graph

[FAIL] Per sequence GC content

Per sequence GC content graph

[OK] Per base N content

N content graph

[OK] Sequence Length Distribution

Sequence length distribution

[OK] Sequence Duplication Levels

Duplication level graph

[OK] Overrepresented sequences

No overrepresented sequences

[WARN] Kmer Content

Kmer graph

Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position
TTTTT 157585 3.2627208 3.8220198 85-89
AAAAA 157100 3.2253466 3.8834915 1
GATCG 686915 3.0587277 4.2870235 1
CGATC 677475 3.0389686 3.5637267 1