##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002002_Airport_GTGGCC_L003_R1_002.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.72682175 34.0 31.0 34.0 31.0 34.0 2 32.94774925 34.0 31.0 34.0 31.0 34.0 3 32.99464775 34.0 31.0 34.0 31.0 34.0 4 36.4019985 37.0 37.0 37.0 35.0 37.0 5 36.33377275 37.0 37.0 37.0 35.0 37.0 6 36.29228325 37.0 37.0 37.0 35.0 37.0 7 36.27063175 37.0 37.0 37.0 35.0 37.0 8 36.25251925 37.0 37.0 37.0 35.0 37.0 9 38.037064 39.0 38.0 39.0 35.0 39.0 10-14 38.306349999999995 39.4 38.4 39.4 35.4 39.4 15-19 39.43782695 41.0 39.2 41.0 36.2 41.0 20-24 39.17458135 40.6 39.0 41.0 35.6 41.0 25-29 38.75830995 40.0 38.0 41.0 35.0 41.0 30-34 38.00341015 39.8 37.0 41.0 33.4 41.0 35-39 36.969815749999995 38.6 35.0 40.6 32.6 41.0 40-44 35.96346215 36.4 35.0 39.8 31.2 41.0 45-49 35.3687299 35.0 35.0 38.4 31.8 41.0 50-54 34.53375925 35.0 34.6 36.2 31.0 39.6 55-59 33.9163482 35.0 34.0 35.0 30.4 38.0 60-64 33.4624051 35.0 34.0 35.0 30.0 36.2 65-69 33.129391299999995 35.0 33.0 35.0 29.2 35.0 70-74 32.855259200000006 35.0 33.0 35.0 29.0 35.0 75-79 32.20303405 34.4 32.6 35.0 27.4 35.0 80-84 32.54342465 35.0 33.0 35.0 29.0 35.0 85-89 32.275367 35.0 33.0 35.0 27.0 35.0 90-94 31.90030085 35.0 33.0 35.0 26.8 35.0 95-99 31.37736235 35.0 33.0 35.0 24.4 35.0 100-101 30.238781000000003 34.0 31.0 35.0 21.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 58.0 3 19.0 4 68.0 5 116.0 6 337.0 7 926.0 8 2036.0 9 2994.0 10 3801.0 11 4375.0 12 4540.0 13 4844.0 14 4972.0 15 5518.0 16 6168.0 17 6721.0 18 7316.0 19 7841.0 20 8643.0 21 9814.0 22 11700.0 23 14761.0 24 18725.0 25 24083.0 26 31022.0 27 38572.0 28 48731.0 29 60458.0 30 75669.0 31 96015.0 32 125784.0 33 172885.0 34 279051.0 35 681620.0 36 1431048.0 37 675925.0 38 119137.0 39 13665.0 40 42.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 34.57623464848443 19.180979075823007 18.030909601993482 28.211876673699077 2 31.38905 22.431625 20.448425 25.730900000000002 3 29.139525 20.57 20.968400000000003 29.322074999999998 4 31.240425 19.4379 19.48885 29.832825000000003 5 31.446875000000002 19.208575 19.3828 29.96175 6 30.819025 18.581025 18.102899999999998 32.49705 7 32.606875 18.498075 18.462825 30.432225000000003 8 30.286600000000004 19.0279 19.20955 31.47595 9 30.910674999999998 18.086775 19.022 31.98055 10-14 31.0882 18.87079 18.969575 31.071434999999997 15-19 31.165795000000003 18.635905 18.801035 31.397265 20-24 31.101923460003984 18.699774477654568 18.816410690671184 31.381891371670267 25-29 31.238578965992264 18.78966877270113 18.75664349363752 31.215108767669086 30-34 31.32732350446445 18.6346981975916 18.643357369580663 31.394620928363288 35-39 31.21816172148975 18.712965306374834 18.73253328168548 31.336339690449933 40-44 31.34062823593026 18.71005659810634 18.678980167036695 31.270334998926703 45-49 31.392265000000002 18.583479999999998 18.59076 31.433495 50-54 31.26411208809253 18.661126783014424 18.708277494990174 31.36648363390287 55-59 31.35149 18.708920000000003 18.676925 31.262665000000002 60-64 31.399429369326786 18.582487757304637 18.589113810184436 31.42896906318414 65-69 31.27945264654804 18.669745437316806 18.692164592707257 31.358637323427896 70-74 31.378875 18.7136 18.65385 31.253674999999998 75-79 31.42316 18.58866 18.58623 31.40195 80-84 31.298184671727963 18.6577189127771 18.68345973905762 31.360636676437316 85-89 31.38856889197993 18.70011929938154 18.65227353157423 31.2590382770643 90-94 31.478008358644637 18.557007287745495 18.560688144096723 31.404296209513145 95-99 31.357313288660087 18.628693089751145 18.671751540886003 31.34224208070277 100-101 31.551042581776784 18.720284181847184 18.584970802310217 31.143702434065823 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.788111322183504 2 57.119949999999996 3 58.461600000000004 4 61.07325 5 61.408624999999994 6 63.316075000000005 7 63.039100000000005 8 61.762550000000005 9 62.89122499999999 10-14 62.159635 15-19 62.56306000000001 20-24 62.483814831674245 25-29 62.45368773366135 30-34 62.72194443282773 35-39 62.55450141193969 40-44 62.61096323485697 45-49 62.825759999999995 50-54 62.6305957219954 55-59 62.614155000000004 60-64 62.82839843251092 65-69 62.63808996997593 70-74 62.632549999999995 75-79 62.825109999999995 80-84 62.658821348165276 85-89 62.64760716904423 90-94 62.88230456815778 95-99 62.699555369362855 100-101 62.6947450158426 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 11.0 1 8.5 2 4.5 3 4.5 4 9.0 5 10.0 6 10.0 7 9.0 8 15.0 9 23.0 10 30.0 11 53.5 12 64.5 13 74.5 14 91.5 15 119.0 16 164.5 17 200.5 18 259.0 19 340.0 20 404.0 21 506.0 22 638.5 23 795.0 24 1055.0 25 1326.5 26 1629.5 27 2017.0 28 2485.5 29 3067.5 30 3612.0 31 4241.0 32 5146.0 33 6007.0 34 6764.5 35 7669.5 36 8626.0 37 9450.5 38 10334.5 39 11235.5 40 12026.0 41 12935.5 42 14172.0 43 15578.5 44 17346.5 45 19785.5 46 22672.0 47 26352.0 48 31209.0 49 36941.5 50 43811.5 51 51604.5 52 59925.0 53 69488.5 54 79892.5 55 90556.0 56 101565.0 57 112785.0 58 124158.5 59 136230.0 60 148607.5 61 160662.0 62 172919.0 63 184165.5 64 193505.0 65 200960.0 66 205664.5 67 206925.5 68 203477.0 69 195239.0 70 182281.0 71 165431.5 72 146229.0 73 124794.5 74 102232.5 75 79325.0 76 58322.5 77 40735.5 78 26402.5 79 15895.0 80 8843.5 81 4635.5 82 2350.5 83 1167.0 84 619.5 85 364.5 86 222.0 87 147.0 88 108.5 89 77.0 90 50.0 91 35.0 92 26.0 93 19.5 94 9.0 95 4.0 96 2.5 97 1.5 98 0.5 99 0.0 100 0.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0343 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 0.0 15-19 0.0 20-24 0.0010400000000000001 25-29 8.45E-4 30-34 0.04818 35-39 0.015205000000000002 40-44 0.004605 45-49 0.0 50-54 0.0015099999999999998 55-59 0.0 60-64 0.01589 65-69 0.018535 70-74 0.0 75-79 0.0 80-84 0.00321 85-89 0.012055 90-94 0.023264999999999997 95-99 0.008015 100-101 6.5E-4 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.1559719250534894 #Duplication Level Relative count 1 100.0 2 0.13268310268170075 3 0.0035048366746109633 4 5.006909535158519E-4 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.0015020728605475557 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 280235 3.1322565 3.4926639 10-14 AAAAA 276920 3.0928204 3.4782546 1 GATCG 1279525 3.069283 4.325205 1 CGATC 1265290 3.0460966 3.336431 6 >>END_MODULE