##FastQC 0.10.0 >>Basic Statistics pass #Measure Value Filename 002002_Airport_GTGGCC_L002_R1_001.fastq.gz File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 4000000 Filtered Sequences 0 Sequence length 101 %GC 62 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.70191775 34.0 31.0 34.0 31.0 34.0 2 32.95721325 34.0 31.0 34.0 31.0 34.0 3 32.9776705 34.0 31.0 34.0 31.0 34.0 4 36.38600275 37.0 37.0 37.0 35.0 37.0 5 36.3212055 37.0 37.0 37.0 35.0 37.0 6 36.27897275 37.0 37.0 37.0 35.0 37.0 7 36.263787 37.0 37.0 37.0 35.0 37.0 8 36.264258 37.0 37.0 37.0 35.0 37.0 9 38.0425995 39.0 38.0 39.0 35.0 39.0 10-14 38.2986872 39.4 38.4 39.4 35.4 39.4 15-19 39.4146249 41.0 39.0 41.0 36.0 41.0 20-24 39.167637400000004 40.6 39.0 41.0 35.6 41.0 25-29 38.670941899999995 40.0 38.0 41.0 34.8 41.0 30-34 37.844667400000006 39.8 36.6 41.0 33.2 41.0 35-39 36.781057749999995 38.4 35.0 40.4 32.0 41.0 40-44 35.88732225 36.4 35.0 40.0 31.0 41.0 45-49 35.1465805 35.0 35.0 38.4 31.0 41.0 50-54 34.2477287 35.0 34.2 36.2 30.2 39.6 55-59 33.59254345 35.0 33.8 35.0 29.8 38.0 60-64 33.066233249999996 35.0 33.0 35.0 27.8 36.2 65-69 32.64783575 35.0 33.0 35.0 27.6 35.0 70-74 32.34316030000001 35.0 33.0 35.0 26.2 35.0 75-79 31.57739515 34.4 32.0 35.0 25.6 35.0 80-84 31.873444800000005 35.0 33.0 35.0 26.2 35.0 85-89 31.47376355 35.0 33.0 35.0 24.0 35.0 90-94 31.027617699999997 35.0 32.4 35.0 22.8 35.0 95-99 30.369827250000004 35.0 31.4 35.0 17.8 35.0 100-101 29.140004625 33.5 30.0 35.0 2.0 35.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 2 76.0 3 20.0 4 48.0 5 158.0 6 403.0 7 1282.0 8 2899.0 9 4476.0 10 5761.0 11 6423.0 12 6757.0 13 7111.0 14 7422.0 15 8046.0 16 9209.0 17 9796.0 18 10665.0 19 11487.0 20 12340.0 21 14011.0 22 16099.0 23 19270.0 24 23304.0 25 28929.0 26 35727.0 27 44081.0 28 54417.0 29 67177.0 30 83056.0 31 105088.0 32 135646.0 33 187740.0 34 299839.0 35 684795.0 36 1322356.0 37 640118.0 38 119527.0 39 14396.0 40 45.0 >>END_MODULE >>Per base sequence content warn #Base G A T C 1 34.55250134756731 19.086380628047657 17.94664508891443 28.4144729354706 2 31.520625000000003 22.3754 20.41965 25.684325 3 29.192249999999998 20.51435 20.94115 29.35225 4 31.283575000000003 19.409475 19.4515 29.85545 5 31.45925 19.178275 19.37535 29.987125 6 30.8234 18.5774 18.0747 32.5245 7 32.644725 18.5182 18.401375 30.435699999999997 8 30.291225 19.054750000000002 19.2162 31.437825000000004 9 30.886975 18.1296 18.97135 32.012075 10-14 31.087101424036213 18.886046053139143 18.966116121198702 31.060736401625945 15-19 31.188159999999996 18.63949 18.787805 31.384545000000003 20-24 31.12024732272055 18.67957547533023 18.838042218464405 31.362134983484818 25-29 31.262230000000002 18.784365 18.74464 31.208765 30-34 31.350302523012314 18.60943142798384 18.64605147652516 31.394214572478692 35-39 31.26041104664739 18.684716731027606 18.726143408808056 31.32872881351695 40-44 31.381625000000003 18.68639 18.678455 31.25353 45-49 31.417250000000003 18.55735 18.592315 31.433085 50-54 31.31074009718415 18.638234821175715 18.686604898567836 31.364420183072294 55-59 31.413935 18.658469999999998 18.631435 31.29616 60-64 31.45138819156039 18.531274166182925 18.563059010193154 31.454278632063527 65-69 31.340055673268935 18.627525847142508 18.671573971819104 31.360844507769457 70-74 31.444065 18.67691 18.602774999999998 31.27625 75-79 31.481654999999996 18.523475 18.563135 31.431735 80-84 31.37523375484167 18.611768128397692 18.638334388966758 31.374663727793884 85-89 31.472813295042922 18.6505930686409 18.590110048592443 31.286483587723733 90-94 31.53138830047613 18.50054902594655 18.511881625644925 31.456181047932397 95-99 31.47082299037809 18.5462584495873 18.582506505298397 31.400412054736215 100-101 31.7482996335076 18.57507344160728 18.477234633013218 31.199392291871902 >>END_MODULE >>Per base GC content warn #Base %GC 1 62.96697428303791 2 57.20495 3 58.5445 4 61.139025000000004 5 61.446374999999996 6 63.3479 7 63.080425 8 61.729049999999994 9 62.89905 10-14 62.14783782566216 15-19 62.57270499999999 20-24 62.482382306205366 25-29 62.470994999999995 30-34 62.744517095491005 35-39 62.58913986016433 40-44 62.635155 45-49 62.850335 50-54 62.67516028025645 55-59 62.710094999999995 60-64 62.90566682362392 65-69 62.700900181038385 70-74 62.72031500000001 75-79 62.91339 80-84 62.749897482635554 85-89 62.759296882766655 90-94 62.98756934840852 95-99 62.871235045114304 100-101 62.9476919253795 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 8.0 1 8.5 2 6.5 3 5.5 4 7.0 5 5.5 6 7.5 7 16.0 8 19.0 9 19.0 10 31.0 11 49.0 12 56.0 13 76.5 14 106.5 15 135.5 16 169.5 17 202.0 18 239.0 19 310.5 20 408.5 21 521.0 22 655.5 23 806.5 24 1023.0 25 1331.0 26 1606.5 27 1989.0 28 2508.5 29 3032.5 30 3710.0 31 4453.0 32 5237.0 33 6050.5 34 6918.5 35 7724.0 36 8658.5 37 9634.0 38 10520.5 39 11357.5 40 12027.0 41 13086.5 42 14297.0 43 15525.5 44 17183.0 45 19542.0 46 22544.5 47 26199.5 48 31030.5 49 36925.5 50 43787.0 51 51346.0 52 59919.0 53 69247.0 54 79429.0 55 89832.5 56 100061.5 57 111362.5 58 123251.0 59 135193.0 60 147670.0 61 160184.5 62 172083.0 63 182995.5 64 192534.5 65 200343.5 66 204909.5 67 206254.0 68 203346.0 69 194866.5 70 182363.0 71 165611.0 72 145778.5 73 124506.5 74 102347.5 75 80346.5 76 59675.5 77 42184.0 78 27926.0 79 17255.0 80 10251.5 81 5863.5 82 3276.5 83 1964.0 84 1269.0 85 834.0 86 570.5 87 418.0 88 312.0 89 210.0 90 148.5 91 95.0 92 63.0 93 49.5 94 37.0 95 23.5 96 12.0 97 6.5 98 3.0 99 1.5 100 1.5 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.051375 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10-14 8.5E-5 15-19 0.0 20-24 0.0011 25-29 0.0 30-34 0.02744 35-39 0.00405 40-44 0.0 45-49 0.0 50-54 1.5999999999999999E-4 55-59 0.0 60-64 0.015239999999999998 65-69 0.018445 70-74 0.0 75-79 0.0 80-84 0.004745 85-89 0.01326 90-94 0.02294 95-99 0.00843 100-101 0.0013375 >>END_MODULE >>Sequence Length Distribution pass #Length Count 101 4000000.0 >>END_MODULE >>Sequence Duplication Levels pass #Total Duplicate Percentage 0.17646470705858663 #Duplication Level Relative count 1 100.0 2 0.1487327667800107 3 0.004507053538788204 4 0.0010015674530640451 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10++ 0.002503918632660113 >>END_MODULE >>Overrepresented sequences pass >>END_MODULE >>Kmer Content warn #Sequence Count Obs/Exp Overall Obs/Exp Max Max Obs/Exp Position TTTTT 284830 3.1990962 3.4799635 80-84 AAAAA 283490 3.1988113 3.5640082 1 GATCG 1277900 3.0642788 4.255807 1 CGATC 1264590 3.0472307 3.4676363 1 >>END_MODULE