BLASTN 2.2.28+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: Haliaeetus_leucocephalus.fa 346,419 sequences; 1,258,793,725 total letters Query= gi|541966693|ref|XM_005437901.1| PREDICTED: Falco cherrug bone morphogenetic protein 4 (BMP4), mRNA Length=630 Score E Sequences producing significant alignments: (Bits) Value Scaffold2823 669 0.0 > Scaffold2823 Length=682045 Score = 669 bits (362), Expect = 0.0 Identities = 372/377 (99%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 5 AGACACCATGATTCCTGGTAACCGAATGCTGATGGTCATCCTACTATGCCAAGTCCTGCT 64 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347531 AGACACCATGATTCCTGGTAACCGAATGCTGATGGTCATCCTACTATGCCAAGTCCTGCT 347590 Query 65 AGGAGGTACTAACCATGCTAGCCTGATACCCGAGCCCGGCAGGAAGAAGGTCGCGGAGCT 124 |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| Sbjct 347591 AGGAGGTACTAACCATGCTAGCCTGATACCCGAGACCGGCAGGAAGAAAGTCGCAGAGCT 347650 Query 125 GCAGGGACAAGCCGGATCCGGACGCCGCTCTGCCCAAAGCCATGAACTCTTGCGGGGTTT 184 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347651 TCAGGGACAAGCCGGATCCGGACGCCGCTCTGCCCAAAGCCATGAACTCTTGCGGGGTTT 347710 Query 185 CGAAACAACTCTGCTGCAGATGTTTGGGCTGCGAAGGCGGCCTCAGCCCAGCAAGTCAGC 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347711 CGAAACAACTCTGCTGCAGATGTTTGGGCTGCGAAGGCGGCCTCAGCCCAGCAAGTCAGC 347770 Query 245 CGTCATTCCTAGTTACATGCTGGATCTCTATCGGCTCCAGTCTGGAGAAGAGGAGGAAAG 304 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347771 CGTCATTCCTAGTTACATGCTGGATCTCTATCGGCTCCAGTCTGGAGAAGAGGAGGAAAG 347830 Query 305 CCTCCAGGAGATTAGCCTGCAGTACCCTGAGCGATCGACCAGCCGGGCAAACACCGTGAG 364 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347831 CCTCCAGGAAATTAGCCTGCAGTACCCTGAGCGATCGACCAGCCGGGCAAACACCGTGAG 347890 Query 365 GAGTTTCCACCATGAAG 381 ||||||||||||||||| Sbjct 347891 GAGTTTCCACCATGAAG 347907 Score = 414 bits (224), Expect = 1e-113 Identities = 242/251 (96%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 380 AGAGCACCTGGAGACTGTCCCGGGTCCCAGTGAGGCGCCCCGGATCCGCTTCGTCTTTAA 439 ||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| || Sbjct 348868 AGAGCACCTGGAGACCGTCCCGGGTCCCAGCGAGGCACCCCGGATCCGCTTCGTCTTCAA 348927 Query 440 CCTCAGCAGCGTGCCGGAAAACGAGGTGATCTCCTCTGCGGAGCTGCGGCTGTACCGGGA 499 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 348928 CCTCAGCAGCGTGCCGGAAAATGAGGTGATCTCCTCGGCGGAGCTGCGGCTGTACCGGGA 348987 Query 500 GCAGGTGGAGGAGCCGAGCGCGGCGTGGGAGAGGGGCTTCCATCGGATAAACATTTATGA 559 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 348988 GCAGGTGGAGGAGCCGAGCGCGGCGTGGGAGAGGGGCTTCCACCGGATAAACATTTACGA 349047 Query 560 AGTGATGAAGCCGCTGTCGGAGCGCGCTCAGGCCATTACGCGCCTGTTGGACACACGTCT 619 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 349048 AGTGATGAAGCCGCTGTCGGAGCGCGCTCAGGCCATTACGCGCCTGTTGGACACGCGTCT 349107 Query 620 GGTGCACCACA 630 ||||||||||| Sbjct 349108 GGTGCACCACA 349118 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 750497291974 Database: Haliaeetus_leucocephalus.fa Posted date: Nov 5, 2013 1:28 PM Number of letters in database: 1,258,793,725 Number of sequences in database: 346,419 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5